Pulications

2022

  • Aguanno, Doriane; Metwaly, Amira; Coleman, Olivia I.; Haller, Dirk: Modeling microbiota-associated human diseases: from minimal models to complex systems. Microbiome Research Reports 1 (2), 2022, 17 more…
  • Brandl, Beate; Rennekamp, Rachel; Reitmeier, Sandra; Pietrynik, Katarzyna; Dirndorfer, Sebastian; Haller, Dirk; Hofmann, Thomas; Skurk, Thomas; Hauner, Hans: Offering Fiber-Enriched Foods Increases Fiber Intake in Adults With or Without Cardiometabolic Risk: A Randomized Controlled Trial. Frontiers in Nutrition 9, 2022 more…
  • Coleman, Olivia I.; Haller, Dirk: Infektionen als Tumorursache: Bakterien und Darmkrebs. In: Springer Reference Medizin. Springer Berlin Heidelberg, 2022 more…
  • Ecker, Miriam; Haller, Dirk: Bedeutung des Mikrobioms für Adipositas und Glukosestoffwechsel. Gynäkologische Endokrinologie, 2022 more…
  • Metwaly, Amira; Reitmeier, Sandra; Haller, Dirk: Microbiome risk profiles as biomarkers for inflammatory and metabolic disorders. Nature Reviews Gastroenterology & Hepatology, 2022 more…
  • Radani, Nikole; Metwaly, Amira; Reitmeier, Sandra; Baumeister, Theresa; Ingermann, Jonas; Horstmann, Julia; Anand, Akanksha; Gatz, Ingrid; Kohlmayer, Florian; Janssen, Klaus-Peter; Slotta-Huspenina, Julia; Schmid, Roland M.; Haller, Dirk; Abrams, Julian A.; Quante, Michael: Analysis of fecal, salivary and tissue microbiome in Barrett Esophagus, Dysplasia and Esophageal Adenocarcinoma. Gastro Hep Advances, 2022 more…
  • Ramaboli, Matsepo; Nesengani, Lucky; Katsidzira, Leolin; Haller, Dirk; Kinross, James; Ocvirk, Soeren; O’Keefe, Stephen J.D.: Interactions between the environmental and human microbiota in the preservation of health and genesis of disease: symposium report. Current Opinion in Gastroenterology 38 (2), 2022, 146-155 more…
  • Schult, David; Reitmeier, Sandra; Koyumdzhieva, Plamena; Lahmer, Tobias; Middelhoff, Moritz; Erber, Johanna; Schneider, Jochen; Kager, Juliane; Frolova, Marina; Horstmann, Julia; Fricke, Lisa; Steiger, Katja; Jesinghaus, Moritz; Janssen, Klaus-Peter; Protzer, Ulrike; Neuhaus, Klaus; Schmid, Roland M.; Haller, Dirk; Quante, Michael: Gut bacterial dysbiosis and instability is associated with the onset of complications and mortality in COVID-19. Gut Microbes 14 (1), 2022 more…

2021

  • Ahmed, Mohamed; Metwaly, Amira; Haller, Dirk: Modeling microbe-host interaction in the pathogenesis of Crohn’s disease. International Journal of Medical Microbiology 311 (3), 2021, 151489 more…
  • Breuninger, Taylor A.; Wawro, Nina; Breuninger, Jakob; Reitmeier, Sandra; Clavel, Thomas; Six-Merker, Julia; Pestoni, Giulia; Rohrmann, Sabine; Rathmann, Wolfgang; Peters, Annette; Grallert, Harald; Meisinger, Christa; Haller, Dirk; Linseisen, Jakob: Associations between habitual diet, metabolic disease, and the gut microbiota using latent Dirichlet allocation. Microbiome 9 (1), 2021 more…
  • Coleman, Olivia I.; Haller, Dirk: Microbe–Mucus Interface in the Pathogenesis of Colorectal Cancer. Cancers 13 (4), 2021, 616 more…
  • Coleman, Olivia; Ecker, Miriam; Haller, Dirk: Dysregulated lipid metabolism in colorectal cancer. Current Opinion in Gastroenterology 38 (2), 2021, 162-167 more…
  • Coleman, Olivia; Ecker, Miriam; Haller, Dirk: Dysregulated lipid metabolism in colorectal cancer. Current Opinion in Gastroenterology 38 (2), 2021, 162-167 more…
  • Dirk, Haller: Intestinal microbiota in health and disease – seeding multidisciplinary research in Germany. International Journal of Medical Microbiology, 2021, 151514 more…
  • Ecker, Miriam; Haller, Dirk: Bedeutung des Mikrobioms für Adipositas und Glukosestoffwechsel. Der Diabetologe, 2021 more…
  • Hitch, Thomas C.A.; Afrizal, Afrizal; Riedel, Thomas; Kioukis, Antonios; Haller, Dirk; Lagkouvardos, Ilias; Overmann, Jörg; Clavel, Thomas: Recent advances in culture-based gut microbiome research. International Journal of Medical Microbiology 311 (3), 2021, 151485 more…
  • Kumar, Neeraj; Hitch, Thomas C. A.; Haller, Dirk; Lagkouvardos, Ilias; Clavel, Thomas: MiMiC: a bioinformatic approach for generation of synthetic communities from metagenomes. Microbial Biotechnology, 2021 more…
  • Kumar, Neeraj; Hitch, Thomas C. A.; Haller, Dirk; Lagkouvardos, Ilias; Clavel, Thomas: MiMiC: a bioinformatic approach for generation of synthetic communities from metagenomes. Microbial Biotechnology, 2021 more…
  • Matchado, Monica Steffi; Lauber, Michael; Reitmeier, Sandra; Kacprowski, Tim; Baumbach, Jan; Haller, Dirk; List, Markus: Network analysis methods for studying microbial communities: A mini review. Computational and Structural Biotechnology Journal 19, 2021, 2687-2698 more…
  • Moitinho‐Silva, L.; Boraczynski, N.; Emmert, H.; Baurecht, H.; Szymczak, S.; Schulz, H.; Haller, D.; Linseisen, J.; Gieger, C.; Peters, A.; Tittmann, L.; Lieb, W.; Bang, C.; Franke, A.; Rodriguez, E.; Weidinger, S.: Host traits, lifestyle and environment are associated with human skin bacteria. British Journal of Dermatology, 2021 more…
  • Papaioannou, Nikos E.; Salei, Natallia; Rambichler, Stephan; Ravi, Kaushikk; Popovic, Jelena; Küntzel, Vanessa; Lehmann, Christian H. K.; Fiancette, Remi; Salvermoser, Johanna; Gajdasik, Dominika W.; Mettler, Ramona; Messerer, Denise; Carrelha, Joana; Ohnmacht, Caspar; Haller, Dirk; Stumm, Ralf; Straub, Tobias; Jacobsen, Sten Eirik W.; Schulz, Christian; Withers, David R.; Schotta, Gunnar; Dudziak, Diana; Schraml, Barbara U.: Environmental signals rather than layered ontogeny imprint the function of type 2 conventional dendritic cells in young and adult mice. Nature Communications 12 (1), 2021 more…
  • Reiter, Sinah; Dunkel, Andreas; Metwaly, Amira; Panes, Julian; Salas, Azucena; Haller, Dirk; Hofmann, Thomas: Development of a Highly Sensitive Ultra-High-Performance Liquid Chromatography Coupled to Electrospray Ionization Tandem Mass Spectrometry Quantitation Method for Fecal Bile Acids and Application on Crohn’s Disease Studies. Journal of Agricultural and Food Chemistry (0), 2021, null more…
  • Reitmeier, Sandra; Hitch, Thomas C. A.; Treichel, Nicole; Fikas, Nikolaos; Hausmann, Bela; Ramer-Tait, Amanda E.; Neuhaus, Klaus; Berry, David; Haller, Dirk; Lagkouvardos, Ilias; Clavel, Thomas: Handling of spurious sequences affects the outcome of high-throughput 16S rRNA gene amplicon profiling. ISME Communications 1 (1), 2021 more…
  • Revilla, Lluís; Mayorgas, Aida; Corraliza, Ana M.; Masamunt, Maria C.; Metwaly, Amira; Haller, Dirk; Tristán, Eva; Carrasco, Anna; Esteve, Maria; Panés, Julian; Ricart, Elena; Lozano, Juan J.; Salas, Azucena: Multi-omic modelling of inflammatory bowel disease with regularized canonical correlation analysis. PLOS ONE 16 (2), 2021, e0246367 more…
  • Rühlemann, Malte Christoph; Hermes, Britt Marie; Bang, Corinna; Doms, Shauni; Moitinho-Silva, Lucas; Thingholm, Louise Bruun; Frost, Fabian; Degenhardt, Frauke; Wittig, Michael; Kässens, Jan; Weiss, Frank Ulrich; Peters, Annette; Neuhaus, Klaus; Völker, Uwe; Völzke, Henry; Homuth, Georg; Weiss, Stefan; Grallert, Harald; Laudes, Matthias; Lieb, Wolfgang; Haller, Dirk; Lerch, Markus M.; Baines, John F.; Franke, Andre: Genome-wide association study in 8,956 German individuals identifies influence of ABO histo-blood groups on gut microbiome. Nature Genetics 53 (2), 2021, 147-155 more…
  • Sillner, Nina; Walker, Alesia; Lucio, Marianna; Maier, Tanja V.; Bazanella, Monika; Rychlik, Michael; Haller, Dirk; Schmitt-Kopplin, Philippe: Longitudinal Profiles of Dietary and Microbial Metabolites in Formula- and Breastfed Infants. Frontiers in Molecular Biosciences 8, 2021 more…
  • Urbauer, Elisabeth; Rath, Eva; Haller, Dirk: Mitochondrial Metabolism in the Intestinal Stem Cell Niche—Sensing and Signaling in Health and Disease. Frontiers in Cell and Developmental Biology 8, 2021 more…

2020

  • Brandl, Beate; Skurk, Thomas; Rennekamp, Rachel; Hannink, Anne; Kiesswetter, Eva; Freiherr, Jessica; Ihsen, Susanne; Roosen, Jutta; Klingenspor, Martin; Haller, Dirk; Krautwurst, Dietmar; Hofmann, Thomas; Linseisen, Jakob; Volkert, Dorothee; Hauner, Hans: A Phenotyping Platform to Characterize Healthy Individuals Across Four Stages of Life - The Enable Study. Frontiers in Nutrition 7, 2020 more…
  • Brandl, Beate; Skurk, Thomas; Rennekamp, Rachel; Hannink, Anne; Kiesswetter, Eva; Freiherr, Jessica; Ihsen, Susanne; Roosen, Jutta; Klingenspor, Martin; Haller, Dirk; Krautwurst, Dietmar; Hofmann, Thomas; Linseisen, Jakob; Volkert, Dorothee; Hauner, Hans: A Phenotyping Platform to Characterize Healthy Individuals Across Four Stages of Life - The Enable Study. Frontiers in Nutrition 7, 2020 more…
  • Brückner, Annecarin; Werkstetter, Katharina Julia; Frivolt, Klara; Shokry, Engy; Ahmed, Mohamed; Metwaly, Amira; Marques, Jair Gonzalez; Uhl, Olaf; Krohn, Kathrin; Hajji, Mohammad; Otte, Sebastian; Pozza, Susanne Bechtold-Dalla; Bufler, Philip; Liptay, Susanne; Haller, Dirk; Koletzko, Berthold; Koletzko, Sibylle; Schwerd, Tobias: Partial enteral nutrition has no benefit on bone health but improves growth in paediatric patients with quiescent or mild Crohn's disease. Clinical Nutrition 39 (12), 2020, 3786-3796 more…
  • Hartstra, Annick V.; Schüppel, Valentina; Imangaliyev, Sultan; Schrantee, Anouk; Prodan, Andrei; Collard, Didier; Levin, Evgeni; Dallinga-Thie, Geesje; Ackermans, Mariette T.; Winkelmeijer, Maaike; Havik, Stefan R.; Metwaly, Amira; Lagkouvardos, Ilias; Nier, Anika; Bergheim, Ina; Heikenwalder, Mathias; Dunkel, Andreas; Nederveen, Aart J.; Liebisch, Gerhard; Mancano, Giulia; Claus, Sandrine P.; Benítez-Páez, Alfonso; la Fleur, Susanne E.; Bergman, Jacques J.; Gerdes, Victor; Sanz, Yolanda; Booij, Jan; Kemper, Elles; Groen, Albert K.; Serlie, Mireille J.; Haller, Dirk; Nieuwdorp, Max: Infusion of donor feces affects the gut–brain axis in humans with metabolic syndrome. Molecular Metabolism 42, 2020, 101076 more…
  • Khaloian, Sevana; Rath, Eva; Hammoudi, Nassim; Gleisinger, Elisabeth; Blutke, Andreas; Giesbertz, Pieter; Berger, Emanuel; Metwaly, Amira; Waldschmitt, Nadine; Allez, Matthieu; Haller, Dirk: Mitochondrial impairment drives intestinal stem cell transition into dysfunctional Paneth cells predicting Crohn’s disease recurrence. Gut 69 (11), 2020, 1939-1951 more…
  • Metwaly, Amira; Dunkel, Andreas; Waldschmitt, Nadine; Raj, Abilash Chakravarthy Durai; Lagkouvardos, Ilias; Corraliza, Ana Maria; Mayorgas, Aida; Martinez-Medina, Margarita; Reiter, Sinah; Schloter, Michael; Hofmann, Thomas; Allez, Matthieu; Panes, Julian; Salas, Azucena; Haller, Dirk: Integrated microbiota and metabolite profiles link Crohn’s disease to sulfur metabolism. Nature Communications 11 (1), 2020 more…
  • Metwaly, Amira; Dunkel, Andreas; Waldschmitt, Nadine; Raj, Abilash Chakravarthy Durai; Lagkouvardos, Ilias; Corraliza, Ana Maria; Mayorgas, Aida; Martinez-Medina, Margarita; Reiter, Sinah; Schloter, Michael; Hofmann, Thomas; Allez, Matthieu; Panes, Julian; Salas, Azucena; Haller, Dirk: Integrated microbiota and metabolite profiles link Crohn’s disease to sulfur metabolism. Nature Communications 11 (1), 2020 more…
  • Metwaly, Amira; Haller, Dirk: Microbial Signals Link Westernized Diet to Metabolic Inflammation: More Evidence to Resolve Controversies. Cellular and Molecular Gastroenterology and Hepatology 9 (2), 2020, 343-344 more…
  • Metwaly, Amira; Haller, Dirk: Microbial Signals Link Westernized Diet to Metabolic Inflammation: More Evidence to Resolve Controversies. Cellular and Molecular Gastroenterology and Hepatology 9 (2), 2020, 343-344 more…
  • Metwaly, Amira; Haller, Dirk: Microbial Signals Link Westernized Diet to Metabolic Inflammation: More Evidence to Resolve Controversies. Cellular and Molecular Gastroenterology and Hepatology 9 (2), 2020, 343-344 more…
  • Naumann, Susanne; Haller, Dirk; Eisner, Peter; Schweiggert-Weisz, Ute: Mechanisms of Interactions between Bile Acids and Plant Compounds—A Review. International Journal of Molecular Sciences 21 (18), 2020, 6495 more…
  • Reitmeier, Sandra; Kiessling, Silke; Clavel, Thomas; List, Markus; Almeida, Eduardo L.; Ghosh, Tarini S.; Neuhaus, Klaus; Grallert, Harald; Linseisen, Jakob; Skurk, Thomas; Brandl, Beate; Breuninger, Taylor A.; Troll, Martina; Rathmann, Wolfgang; Linkohr, Birgit; Hauner, Hans; Laudes, Matthias; Franke, Andre; Le Roy, Caroline I.; Bell, Jordana T.; Spector, Tim; Baumbach, Jan; O’Toole, Paul W.; Peters, Annette; Haller, Dirk: Arrhythmic Gut Microbiome Signatures Predict Risk of Type 2 Diabetes. Cell Host & Microbe 28 (2), 2020, 258-272.e6 more…
  • Reitmeier, Sandra; Kiessling, Silke; Clavel, Thomas; List, Markus; Almeida, Eduardo L.; Ghosh, Tarini S.; Neuhaus, Klaus; Grallert, Harald; Linseisen, Jakob; Skurk, Thomas; Brandl, Beate; Breuninger, Taylor A.; Troll, Martina; Rathmann, Wolfgang; Linkohr, Birgit; Hauner, Hans; Laudes, Matthias; Franke, Andre; Le Roy, Caroline I.; Bell, Jordana T.; Spector, Tim; Baumbach, Jan; O’Toole, Paul W.; Peters, Annette; Haller, Dirk: Arrhythmic Gut Microbiome Signatures Predict Risk of Type 2 Diabetes. Cell Host & Microbe 28 (2), 2020, 258-272.e6 more…
  • Reitmeier, Sandra; Kiessling, Silke; Neuhaus, Klaus; Haller, Dirk: Comparing Circadian Rhythmicity in the Human Gut Microbiome. STAR Protocols 1 (3), 2020, 100148 more…
  • Stengel, Stephanie T.; Fazio, Antonella; Lipinski, Simone; Jahn, Martin T.; Aden, Konrad; Ito, Go; Wottawa, Felix; Kuiper, Jan W.P.; Coleman, Olivia I.; Tran, Florian; Bordoni, Dora; Bernardes, Joana P.; Jentzsch, Marlene; Luzius, Anne; Bierwirth, Sandra; Messner, Berith; Henning, Anna; Welz, Lina; Kakavand, Nassim; Falk-Paulsen, Maren; Imm, Simon; Hinrichsen, Finn; Zilbauer, Matthias; Schreiber, Stefan; Kaser, Arthur; Blumberg, Richard; Haller, Dirk; Rosenstiel, Philip: Activating Transcription Factor 6 Mediates Inflammatory Signals in Intestinal Epithelial Cells Upon Endoplasmic Reticulum Stress. Gastroenterology 159 (4), 2020, 1357-1374.e10 more…
  • Troll, Martina; Brandmaier, Stefan; Reitmeier, Sandra; Adam, Jonathan; Sharma, Sapna; Sommer, Alice; Bind, Marie-Abèle; Neuhaus, Klaus; Clavel, Thomas; Adamski, Jerzy; Haller, Dirk; Peters, Annette; Grallert, Harald: Investigation of Adiposity Measures and Operational Taxonomic unit (OTU) Data Transformation Procedures in Stool Samples from a German Cohort Study Using Machine Learning Algorithms. Microorganisms 8 (4), 2020, 547 more…
  • Zietek, Tamara; Giesbertz, Pieter; Ewers, Maren; Reichart, Florian; Weinmüller, Michael; Urbauer, Elisabeth; Haller, Dirk; Demir, Ihsan Ekin; Ceyhan, Güralp O.; Kessler, Horst; Rath, Eva: Organoids to Study Intestinal Nutrient Transport, Drug Uptake and Metabolism – Update to the Human Model and Expansion of Applications. Frontiers in Bioengineering and Biotechnology 8, 2020 more…

2019

  • Coleman, Olivia I.; Haller, Dirk: ER Stress and the UPR in Shaping Intestinal Tissue Homeostasis and Immunity. Frontiers in Immunology 10, 2019 more…
  • Haller D: Gasteditorial: Quo vadis - 10 Jahre Mikrobiomforschung in Deutschland. – Trillium Immunologie 2019; 3(1):9-13. TUM, 2019, more…
  • Lengfelder, Isabella; Sava, Irina G.; Hansen, Jonathan J.; Kleigrewe, Karin; Herzog, Jeremy; Neuhaus, Klaus; Hofmann, Thomas; Sartor, R. Balfour; Haller, Dirk: Complex Bacterial Consortia Reprogram the Colitogenic Activity of Enterococcus faecalis in a Gnotobiotic Mouse Model of Chronic, Immune-Mediated Colitis. Frontiers in Immunology 10, 2019 more…
  • Liebisch, Gerhard; Ecker, Josef; Roth, Sebastian; Schweizer, Sabine; Öttl, Veronika; Schött, Hans-Frieder; Yoon, Hongsup; Haller, Dirk; Holler, Ernst; Burkhardt, Ralph; Matysik, Silke: Quantification of Fecal Short Chain Fatty Acids by Liquid Chromatography Tandem Mass Spectrometry—Investigation of Pre-Analytic Stability. Biomolecules 9 (4), 2019, 121 more…
  • Markota, Anamarija; Metzger, Rebecca; Heiseke, Alexander F.; Jandl, Lisa; Dursun, Ezgi; Eisenächer, Katharina; Reindl, Wolfgang; Haller, Dirk; Krug, Anne B.: Comparison of iron-reduced and iron-supplemented semisynthetic diets in T cell transfer colitis. PLOS ONE 14 (7), 2019, e0218332 more…
  • Metwaly, Amira; Haller, Dirk: Strain-Level Diversity in the Gut: The P. copri Case. Cell Host & Microbe 25 (3), 2019, 349-350 more…
  • Metwaly, Amira; Haller, Dirk: Multi-omics in IBD biomarker discovery: the missing links. Nature Reviews Gastroenterology & Hepatology 16 (10), 2019, 587-588 more…
  • Münch, Natasha Stephens; Fang, Hsin-Yu; Ingermann, Jonas; Maurer, H. Carlo; Anand, Akanksha; Kellner, Victoria; Sahm, Vincenz; Wiethaler, Maria; Baumeister, Theresa; Wein, Frederik; Einwächter, Henrik; Bolze, Florian; Klingenspor, Martin; Haller, Dirk; Kavanagh, Maria; Lysaght, Joanne; Friedman, Richard; Dannenberg, Andrew J.; Pollak, Michael; Holt, Peter R.; Muthupalani, Sureshkumar; Fox, James G.; Whary, Mark T.; Lee, Yoomi; Ren, Tony Y.; Elliot, Rachael; Fitzgerald, Rebecca; Steiger, Katja; Schmid, Roland M.; Wang, Timothy C.; Quante, Michael: High-Fat Diet Accelerates Carcinogenesis in a Mouse Model of Barrett’s Esophagus via Interleukin 8 and Alterations to the Gut Microbiome. Gastroenterology 157 (2), 2019, 492-506.e2 more…
  • Naumann, Susanne; Schweiggert-Weisz, Ute; Eglmeier, Julia; Haller, Dirk; Eisner, Peter: In Vitro Interactions of Dietary Fibre Enriched Food Ingredients with Primary and Secondary Bile Acids. Nutrients 11 (6), 2019, 1424 more…
  • Naumann; Schweiggert-Weisz; Haller; Eisner: Retention of Primary Bile Acids by Lupin Cell Wall Polysaccharides Under In Vitro Digestion Conditions. Nutrients 11 (9), 2019, 2117 more…
  • Sillner, Nina; Walker, Alesia; Hemmler, Daniel; Bazanella, Monika; Heinzmann, Silke S.; Haller, Dirk; Schmitt-Kopplin, Philippe: Milk-Derived Amadori Products in Feces of Formula-Fed Infants. Journal of Agricultural and Food Chemistry 67 (28), 2019, 8061-8069 more…
  • Stecher B, Baines J, Holler E, Zeissig S, Haller D.: Aus der Grundlagenforschung: Der lange Weg von der Korrelation zur Kausalität – Trillium Immunologie 2019; 3(1):20-27. TUM, 2019, more…

2018

  • Biesalski, Bischoff, Pirlich, Weimann eds.: Mikrobiota. In: Ernährungsmedizin. Thieme, 2018 more…
  • Buhner, Sabine; Hahne, Hannes; Hartwig, Kerstin; Li, Qin; Vignali, Sheila; Ostertag, Daniela; Meng, Chen; Hörmannsperger, Gabriele; Braak, Breg; Pehl, Christian; Frieling, Thomas; Barbara, Giovanni; De Giorgio, Roberto; Demir, Ihsan Ekin; Ceyhan, Güralp Onur; Zeller, Florian; Boeckxstaens, Guy; Haller, Dirk; Kuster, Bernhard; Schemann, Michael: Protease signaling through protease activated receptor 1 mediate nerve activation by mucosal supernatants from irritable bowel syndrome but not from ulcerative colitis patients. PLOS ONE 13 (3), 2018, e0193943 more…
  • Coleman, Olivia I.; Haller, Dirk: Bacterial Signaling at the Intestinal Epithelial Interface in Inflammation and Cancer. Frontiers in Immunology 8, 2018 more…
  • Coleman, Olivia I.; Lobner, Elena M.; Bierwirth, Sandra; Sorbie, Adam; Waldschmitt, Nadine; Rath, Eva; Berger, Emanuel; Lagkouvardos, Ilias; Clavel, Thomas; McCoy, Kathleen D.; Weber, Achim; Heikenwalder, Mathias; Janssen, Klaus-Peter; Haller, Dirk: Activated ATF6 Induces Intestinal Dysbiosis and Innate Immune Response to Promote Colorectal Tumorigenesis. Gastroenterology 155 (5), 2018, 1539-1552.e12 more…
  • Cruz-Aguliar, Rebeca M.; Wantia, Nina; Clavel, Thomas; Vehreschild, Maria J.G.T.; Buch, Thorsten; Bajbouj, Monther; Haller, Dirk; Busch, Dirk; Schmid, Roland M.; Stein-Thoeringer, Christoph K.: An Open-Labeled Study on Fecal Microbiota Transfer in Irritable Bowel Syndrome Patients Reveals Improvement in Abdominal Pain Associated with the Relative Abundance of <b><i>Akkermansia Muciniphila</i></b>. Digestion 100 (2), 2018, 127-138 more…
  • Hildner K, Waldschmitt N, Haller D.: Nature-Springer (Ed.): The Gut Microbiome in Health and Disease. Springer Nature, 2018 more…
  • Just, Sarah; Mondot, Stanislas; Ecker, Josef; Wegner, Katrin; Rath, Eva; Gau, Laura; Streidl, Theresa; Hery-Arnaud, Genevieve; Schmidt, Sinah; Lesker, Till Robin; Bieth, Valentin; Dunkel, Andreas; Strowig, Till; Hofmann, Thomas; Haller, Dirk; Liebisch, Gerhard; Gérard, Philippe; Rohn, Sascha; Lepage, Patricia; Clavel, Thomas: The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism. Microbiome 6 (1), 2018 more…
  • Just, Sarah; Mondot, Stanislas; Ecker, Josef; Wegner, Katrin; Rath, Eva; Gau, Laura; Streidl, Theresa; Hery-Arnaud, Genevieve; Schmidt, Sinah; Lesker, Till Robin; Bieth, Valentin; Dunkel, Andreas; Strowig, Till; Hofmann, Thomas; Haller, Dirk; Liebisch, Gerhard; Gérard, Philippe; Rohn, Sascha; Lepage, Patricia; Clavel, Thomas: The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism. Microbiome 6 (1), 2018 more…
  • Kindt, Alida; Liebisch, Gerhard; Clavel, Thomas; Haller, Dirk; Hörmannsperger, Gabriele; Yoon, Hongsup; Kolmeder, Daniela; Sigruener, Alexander; Krautbauer, Sabrina; Seeliger, Claudine; Ganzha, Alexandra; Schweizer, Sabine; Morisset, Rosalie; Strowig, Till; Daniel, Hannelore; Helm, Dominic; Küster, Bernhard; Krumsiek, Jan; Ecker, Josef: The gut microbiota promotes hepatic fatty acid desaturation and elongation in mice. Nature Communications 9 (1), 2018 more…
  • Naumann, Susanne; Schweiggert-Weisz, Ute; Bader-Mittermaier, Stephanie; Haller, Dirk; Eisner, Peter: Differentiation of Adsorptive and Viscous Effects of Dietary Fibres on Bile Acid Release by Means of In Vitro Digestion and Dialysis. International Journal of Molecular Sciences 19 (8), 2018, 2193 more…
  • Olivares, Marta; Schüppel, Valentina; Hassan, Ahmed M.; Beaumont, Martin; Neyrinck, Audrey M.; Bindels, Laure B.; Benítez-Páez, Alfonso; Sanz, Yolanda; Haller, Dirk; Holzer, Peter; Delzenne, Nathalie M.: The Potential Role of the Dipeptidyl Peptidase-4-Like Activity From the Gut Microbiota on the Host Health. Frontiers in Microbiology 9, 2018 more…
  • Ott, Beate; Skurk, Thomas; Lagkouvardos, llias; Fischer, Sandra; Büttner, Janine; Lichtenegger, Martina; Clavel, Thomas; Lechner, Andreas; Rychlik, Michael; Haller, Dirk; Hauner, Hans: Short-Term Overfeeding with Dairy Cream Does Not Modify Gut Permeability, the Fecal Microbiota, or Glucose Metabolism in Young Healthy Men. The Journal of Nutrition 148 (1), 2018, 77-85 more…
  • Rath, Eva; Moschetta, Antonio; Haller, Dirk: Mitochondrial function — gatekeeper of intestinal epithelial cell homeostasis. Nature Reviews Gastroenterology & Hepatology 15 (8), 2018, 497-516 more…
  • Waldschmitt, Nadine; Metwaly, Amira; Fischer, Sandra; Haller, Dirk: Microbial Signatures as a Predictive Tool in IBD—Pearls and Pitfalls. Inflammatory Bowel Diseases 24 (6), 2018, 1123-1132 more…
  • Yoon, Hongsup; Schaubeck, Monika; Lagkouvardos, Ilias; Blesl, Andreas; Heinzlmeir, Stephanie; Hahne, Hannes; Clavel, Thomas; Panda, Suchita; Ludwig, Christina; Kuster, Bernhard; Manichanh, Chaysavanh; Kump, Patrizia; Haller, Dirk; Hörmannsperger, Gabriele: Increased Pancreatic Protease Activity in Response to Antibiotics Impairs Gut Barrier and Triggers Colitis. Cellular and Molecular Gastroenterology and Hepatology 6 (3), 2018, 370-388.e3 more…

2017

  • Bazanella, M.; Maier, T.V.; Clavel, T.; Lagkouvardos, I.; Lucio, M.; Maldonado-Gòmez, M.X.; Autran, C.; Walter, J.; Bode, L.; Schmitt-Kopplin, P.; Haller, D.: Randomized controlled trial on the impact of early-life intervention with bifidobacteria on the healthy infant fecal microbiota and metabolome. American Journal of Clinical Nutrition 106 (5), 2017, 1274-1286 more…
  • Buttó LF, Haller D.: Intestinal Microbiology and Ecology in Crohn´s Disease and Ulcerative Colitis. In: Baumgart, Daniel C. (Ed.): Crohn's Disease and Ulcerative Colitis. Springer International Publishing (Second Edition. edn.), 2017 more…
  • Buttó, L.F.; Haller, D.: Dysbiosis in Crohn's disease - Joint action of stochastic injuries and focal inflammation in the gut. Gut Microbes, 2017, 1-6 more…
  • Buttó, L.F.; Haller, D.: Functional relevance of microbiome signatures: The correlation era requires tools for consolidation. Journal of Allergy and Clinical Immunology 139 (4), 2017, 1092-1098 more…
  • Ott, B.; Skurk, T.; Hastreiter, L.; Lagkouvardos, I.; Fischer, S.; Büttner, J.; Kellerer, T.; Clavel, T.; Rychlik, M.; Haller, D.; Hauner, H.: Effect of caloric restriction on gut permeability, inflammation markers, and fecal microbiota in obese women. Scientific Reports 7 (1), 2017 more…
  • Walker, A.; Pfitzner, B.; Harir, M.; Schaubeck, M.; Calasan, J.; Heinzmann, S.S.; Turaev, D.; Rattei, T.; Endesfelder, D.; Castell, W.Z.; Haller, D.; Schmid, M.; Hartmann, A.; Schmitt-Kopplin, P.: Sulfonolipids as novel metabolite markers of Alistipes and Odoribacter affected by high-fat diets. Scientific Reports 7 (1), 2017 more…
  • Yuan, D.; Huang, S.; Berger, E.; Liu, L.; Gross, N.; Heinzmann, F.; Ringelhan, M.; Connor, T.O.; Stadler, M.; Meister, M.; Weber, J.; Öllinger, R.; Simonavicius, N.; Reisinger, F.; Hartmann, D.; Meyer, R.; Reich, M.; Seehawer, M.; Leone, V.; Höchst, B.; Wohlleber, D.; Jörs, S.; Prinz, M.; Spalding, D.; Protzer, U.; Luedde, T.; Terracciano, L.; Matter, M.; Longerich, T.; Knolle, P.; Ried, T.; Keitel, V.; Geisler, F.; Unger, K.; Cinnamon, E.; Pikarsky, E.; Hüser, N.; Davis, R.J.; Tschaharganeh, D.F.; Rad, R.; Weber, A.; Zender, L.; Haller, D.; Heikenwalder, M.: Kupffer Cell-Derived Tnf Triggers Cholangiocellular Tumorigenesis through JNK due to Chronic Mitochondrial Dysfunction and ROS. Cancer Cell 31 (6), 2017, 771-789.e6 more…

2016

  • Berger, E.; Rath, E.; Yuan, D.; Waldschmitt, N.; Khaloian, S.; Allgäuer, M.; Staszewski, O.; Lobner, E.M.; Schöttl, T.; Giesbertz, P.; Coleman, O.I.; Prinz, M.; Weber, A.; Gerhard, M.; Klingenspor, M.; Janssen, K.-P.; Heikenwalder, M.; Haller, D.: Mitochondrial function controls intestinal epithelial stemness and proliferation. Nature Communications 7, 2016 more…
  • Buttó, L.F.; Haller, D.: Dysbiosis in intestinal inflammation: Cause or consequence. International Journal of Medical Microbiology 306 (5), 2016, 302-309 more…
  • Endig, J.; Buitrago-Molina, L.E.; Marhenke, S.; Reisinger, F.; Saborowski, A.; Schütt, J.; Limbourg, F.; Könecke, C.; Schreder, A.; Michael, A.; Misslitz, A.C.; Healy, M.E.; Geffers, R.; Clavel, T.; Haller, D.; Unger, K.; Finegold, M.; Weber, A.; Manns, M.P.; Longerich, T.; Heikenwälder, M.; Vogel, A.: Dual Role of the Adaptive Immune System in Liver Injury and Hepatocellular Carcinoma Development. Cancer Cell 30 (2), 2016, 308-323 more…
  • Frick, J.-S.; Haller, D.: Intestinal microbiota: From sequencing to function. International Journal of Medical Microbiology 306 (5), 2016, 255-256 more…
  • Hörmannsperger, G.; Blesl, A.; Haller, D.: Intestinal Microbiome [Intestinales Mikrobiom]. Aktuelle Ernahrungsmedizin 41 (3), 2016, 207-217 more…
  • Kübeck, R.; Bonet-Ripoll, C.; Hoffmann, C.; Walker, A.; Müller, V.M.; Schüppel, V.L.; Lagkouvardos, I.; Scholz, B.; Engel, K.-H.; Daniel, H.; Schmitt-Kopplin, P.; Haller, D.; Clavel, T.; Klingenspor, M.: Dietary fat and gut microbiota interactions determine diet-induced obesity in mice. Molecular Metabolism 5 (12), 2016, 1162-1174 more…
  • Lagkouvardos, I.; Joseph, D.; Kapfhammer, M.; Giritli, S.; Horn, M.; Haller, D.; Clavel, T.: IMNGS: A comprehensive open resource of processed 16S rRNA microbial profiles for ecology and diversity studies. Scientific Reports 6, 2016 more…
  • Lagkouvardos, I.; Pukall, R.; Abt, B.; Foesel, B.U.; Meier-Kolthoff, J.P.; Kumar, N.; Bresciani, A.; Martínez, I.; Just, S.; Ziegler, C.; Brugiroux, S.; Garzetti, D.; Wenning, M.; Bui, T.P.N.; Wang, J.; Hugenholtz, F.; Plugge, C.M.; Peterson, D.A.; Hornef, M.W.; Baines, J.F.; Smidt, H.; Walter, J.; Kristiansen, K.; Nielsen, H.B.; Haller, D.; Overmann, J.; Stecher, B.; Clavel, T.: The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota. Nature Microbiology 1, 2016 more…
  • Lagkouvardos, Ilias; Pukall, Rüdiger; Abt, Birte; Foesel, Bärbel U.; Meier-Kolthoff, Jan P.; Kumar, Neeraj; Bresciani, Anne; Martínez, Inés; Just, Sarah; Ziegler, Caroline; Brugiroux, Sandrine; Garzetti, Debora; Wenning, Mareike; Bui, Thi P. N.; Wang, Jun; Hugenholtz, Floor; Plugge, Caroline M.; Peterson, Daniel A.; Hornef, Mathias W.; Baines, John F.; Smidt, Hauke; Walter, Jens; Kristiansen, Karsten; Nielsen, Henrik B.; Haller, Dirk; Overmann, Jörg; Stecher, Bärbel; Clavel, Thomas: Corrigendum: The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota. Nature Microbiology 1 (11), 2016, 16219 more…
  • Lee, T.; Clavel, T.; Smirnov, K.; Schmidt, A.; Lagkouvardos, I.; Walker, A.; Lucio, M.; Michalke, B.; Schmitt-Kopplin, P.; Fedorak, R.; Haller, D.: Oral versus intravenous iron replacement therapy distinctly alters the gut microbiota and metabolome in patients with IBD. Gut 66 (5), 2016, 863-871 more…
  • Müller, V.M.; Zietek, T.; Rohm, F.; Fiamoncini, J.; Lagkouvardos, I.; Haller, D.; Clavel, T.; Daniel, H.: Gut barrier impairment by high-fat diet in mice depends on housing conditions. Molecular Nutrition and Food Research 60 (4), 2016, 897-908 more…
  • Neyrinck, A.M.; Schüppel, V.L.; Lockett, T.; Haller, D.; Delzenne, N.M.: Microbiome and metabolic disorders related to obesity: Which lessons to learn from experimental models? Trends in Food Science and Technology 57, 2016, 256-264 more…
  • Rausch, P.; Basic, M.; Batra, A.; Bischoff, S.C.; Blaut, M.; Clavel, T.; Gläsner, J.; Gopalakrishnan, S.; Grassl, G.A.; Günther, C.; Haller, D.; Hirose, M.; Ibrahim, S.; Loh, G.; Mattner, J.; Nagel, S.; Pabst, O.; Schmidt, F.; Siegmund, B.; Strowig, T.; Volynets, V.; Wirtz, S.; Zeissig, S.; Zeissig, Y.; Bleich, A.; Baines, J.F.: Analysis of factors contributing to variation in the C57BL/6J fecal microbiota across German animal facilities. International Journal of Medical Microbiology 306 (5), 2016, 343-355 more…
  • Schaubeck, M.; Clavel, T.; Calasan, J.; Lagkouvardos, I.; Haange, S.B.; Jehmlich, N.; Basic, M.; Dupont, A.; Hornef, M.; Von Bergen, M.; Bleich, A.; Haller, D.: Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence. Gut 65 (2), 2016, 225-237 more…
  • Schwerd, T.; Frivolt, K.; Clavel, T.; Lagkouvardos, I.; Katona, G.; Mayr, D.; Uhlig, H.H.; Haller, D.; Koletzko, S.; Bufler, P.: Exclusive enteral nutrition in active pediatric Crohn disease: Effects on intestinal microbiota and immune regulation. Journal of Allergy and Clinical Immunology 138 (2), 2016, 592-596 more…
  • Schüppel, V.; Haller, D.: Intestinal microbiome in chronic diseases: Relevance of gut bacteria in inflammatory bowel diseases and metabolic disorders [Das Mikrobiom bei chronischen Erkrankungen: Darmbakterien bei chronisch-entzündlichen und Stoffwechselkrankheiten]. Diabetologe 12 (6), 2016, 420-427 more…

2015

  • Buttó, L.F.; Schaubeck, M.; Haller, D.: Mechanisms of microbe-host interaction in Crohn's disease: Dysbiosis vs. Pathobiont Selection. Frontiers in Immunology 6 (NOV), 2015 more…
  • Fasolino, I.; Izzo, A.A.; Clavel, T.; Romano, B.; Haller, D.; Borrelli, F.: Orally administered allyl sulfides from garlic ameliorate murine colitis. Molecular Nutrition and Food Research 59 (3), 2015, 434-442 more…
  • Gruber, L.; Hemmerling, J.; Schüppel, V.; Müller, M.; Boekschoten, M.V.; Haller, D.: Maternal high-fat diet accelerates development of Crohn's disease-like ileitis in TNF ΔaRE/WT offspring. Inflammatory Bowel Diseases 21 (9), 2015, 2016-2025 more…
  • Haller, D.; Hörmannsperger, G.: Interaction between humans and intestinal bacteria as a determinant for intestinal health: Intestinal microbiome and inflammatory bowel diseases [Die Interaktion zwischen Darmbakterien und Mensch als zentraler Faktor für die Darmgesundheit: Mikrobiom und chronisch entzündliche Darmerkrankungen]. Bundesgesundheitsblatt - Gesundheitsforschung - Gesundheitsschutz 58 (2), 2015, 159-165 more…
  • Haller, Dirk; Hörmannsperger, Gabriele: Mikrobiologie – 1.3. In: Entzündliche Darmerkrankungen. Schattauer-Verlag, 2015, 17-22 more…
  • Haller, Dirk; Hörmannsperger, Gabriele: Darmgesundheit und Mikrobiota. Springer Fachmedien Wiesbaden, 2015 more…
  • Hemmerling, J.; Jansen, J.; Müller, M.; Haller, D.: Fetal gut laser microdissection in combination with RNA preamplification enables epithelial-specific transcriptional profiling. Journal of Immunological Methods 416, 2015, 189-192 more…
  • Hörmannsperger, G.; Schaubeck, M.; Haller, D.: Intestinal microbiota in animal models of inflammatory diseases. ILAR Journal 56 (2), 2015, 179-191 more…
  • Kless, C., Müller, V.M., Schüppel, V.L., Lichtenegger, M., Rychlik, M., Daniel, H., Klingenspor, M., Haller, D.: Diet-induced obesity causes metabolic impairment independent of alterations in gut barrier integrity. Molecular Nutrition and Food Research 59 (5), 2015, 968-978 more…
  • Kläring, K.; Just, S.; Lagkouvardos, I.; Hanske, L.; Haller, D.; Blaut, M.; Wenning, M.; Clavel, T.: Murimonas intestini gen. nov., sp. nov., an acetateproducing bacterium of the family Lachnospiraceae isolated from the mouse gut. International Journal of Systematic and Evolutionary Microbiology 65 (3), 2015, 870-878 more…
  • Kläring, K; Just, S; Lagkouvardos, I; Hanske, L; Haller, D; Blaut, M; Wenning, M; Clavel, T;: <em>Murimonas intestine</em> gen. nov., sp. nov., an acetateproducing bacterium of the family <em>Lachnospiraceae</em> isolated from the mouse gut. International Journal of Systematic and Evolutionary Microbiology (65), 2015, 870-878 more…
  • Lagkouvardos, I.; Kläring, K.; Heinzmann, S.S.; Platz, S.; Scholz, B.; Engel, K.-H.; Schmitt-Kopplin, P.; Haller, D.; Rohn, S.; Skurk, T.; Clavel, T.: Gut metabolites and bacterial community networks during a pilot intervention study with flaxseeds in healthy adult men. Molecular Nutrition and Food Research 59 (8), 2015, 1614-1628 more…
  • Martin, F.-P.J.; Lichti, P.; Bosco, N.; Brahmbhatt, V.; Oliveira, M.; Haller, D.; Benyacoub, J.: Metabolic phenotyping of an adoptive transfer mouse model of experimental colitis and impact of dietary fish oil intake. Journal of Proteome Research 14 (4), 2015, 1911-1919 more…
  • Ocvirk, S.; Sava, I.G.; Lengfelder, I.; Lagkouvardos, I.; Steck, N.; Roh, J.H.; Tchaptchet, S.; Bao, Y.; Hansen, J.J.; Huebner, J.; Carroll, I.M.; Murray, B.E.; Sartor, R.B.; Haller, D.: Surface-Associated Lipoproteins Link Enterococcus faecalis Virulence to Colitogenic Activity in IL-10-Deficient Mice Independent of Their Expression Levels. PLoS Pathogens 11 (6), 2015 more…
  • Schaubeck, M.; Haller, D.: Reciprocal interaction of diet and microbiome in inflammatory bowel diseases. Current Opinion in Gastroenterology 31 (6), 2015, 464-470 more…
  • Würth, R.; Hörmannsperger, G.; Wilke, J.; Foerst, P.; Haller, D.; Kulozik, U.: Protective effect of milk protein based microencapsulation on bacterial survival in simulated gastric juice versus the murine gastrointestinal system. Journal of Functional Foods 15, 2015, 116-125 more…
  • Würth, R.; Hörmannsperger, G.; Wilke, J.; Först, P.; Haller, D.; Kulozik, U.: Protective effect of milk protein based microencapsulation on bacterial survival in simulated gastric juice versus the murine gastrointestinal system. Journal of Functional Foods 15, 2015, 116--125 more…
  • Würth, R.; Lagkouvardos, I.; Clavel, T.; Wilke, J.; Foerst, P.; Kulozik, U.; Haller, D.; Hörmannsperger, G.: Physiological relevance of food grade microcapsules: Impact of milk protein based microcapsules on inflammation in mouse models for inflammatory bowel diseases. Molecular Nutrition and Food Research 59 (8), 2015, 1629-1634 more…
  • Würth, R.; Lagkouvardos, I.; Clavel, T.; Wilke, J.; Först, P.; Kulozik, U.; Haller, D.; Hörmannsperger, G.: Physiological relevance of food grade microcapsules: Impact of milk protein based microcapsules on inflammation in mouse models for inflammatory bowel diseases. Molecular Nutrition {&} Food Research 59 (8), 2015, 1629--1634 more…
  • Wüstner, S.; Mejías-Luque, R.; Koch, M.F.; Rath, E.; Vieth, M.; Sieber, S.A.; Haller, D.; Gerhard, M.: Helicobacter pylori γ-glutamyltranspeptidase impairs T-lymphocyte function by compromising metabolic adaption through inhibition of cMyc and IRF4 expression. Cellular Microbiology 17 (1), 2015, 51-61 more…
  • Zietek, T.; Rath, E.; Haller, D.; Daniel, H.: Intestinal organoids for assessing nutrient transport, sensing and incretin secretion. Scientific Reports 5, 2015 more…

2014

  • Clavel, T.; Desmarchelier, C.; Haller, D.; Gérard, P.; Rohn, S.; Lepage, P.; Daniel, H.: Intestinal microbiota in metabolic diseases: From bacterial community structure and functions to species of pathophysiological relevance. Gut Microbes 5 (4), 2014, 544-551 more…
  • Daniel, H.; Gholami, A.M.; Berry, D.; Desmarchelier, C.; Hahne, H.; Loh, G.; Mondot, S.; Lepage, P.; Rothballer, M.; Walker, A.; Böhm, C.; Wenning, M.; Wagner, M.; Blaut, M.; Schmitt-Kopplin, P.; Kuster, B.; Haller, D.; Clavel, T.: High-fat diet alters gut microbiota physiology in mice. ISME Journal 8 (2), 2014, 295-308 more…
  • Erben, U.; Loddenkemper, C.; Doerfel, K.; Spieckermann, S.; Haller, D.; Heimesaat, M.M.; Zeitz, M.; Siegmund, B.; Ku¨hl, A.A.: A guide to histomorphological evaluation of intestinal inflammation in mouse models. International Journal of Clinical and Experimental Pathology 7 (8), 2014, 4557-4576 more…
  • Gruber, Lisa; Haller, Dirk: Role of the Gut Microbiota in Maintaining GI Health: Highlights on Inflammatory Bowel Disease. In: Molecular and Integrative Toxicology. Springer London, 2014 more…
  • Haller, D.: The intestine as an immunocompetent interface organ [Der Darm als immunkompetentes Grenzflächenorgan]. Allergo Journal 23 (4), 2014, 573-621 more…
  • Hemmerling, J.; Heller, K.; Hörmannsperger, G.; Bazanella, M.; Clavel, T.; Kollias, G.; Haller, D.: Fetal exposure to maternal inflammation does not affect postnatal development of genetically-driven ileitis and colitis. PLoS ONE 9 (5), 2014 more…
  • Lindenstrauß, A.G.; Ehrmann, M.A.; Behr, J.; Landstorfer, R.; Haller, D.; Sartor, R.B.; Vogel, R.F.: Transcriptome analysis of Enterococcus faecalis toward its adaption to surviving in the mouse intestinal tract. Archives of Microbiology 196 (6), 2014, 423-433 more…
  • Volceanov, L.; Herbst, K.; Biniossek, M.; Schilling, O.; Haller, D.; Nölke, T.; Subbarayal, P.; Rudel, T.; Zieger, B.; Häcker, G.: Septins arrange F-Actin-Containing fibers on the chlamydia trachomatis inclusion and are required for normal release of the inclusion by extrusion. mBio 5 (5), 2014 more…
  • Waldschmitt, N.; Berger, E.; Rath, E.; Sartor, R.B.; Weigmann, B.; Heikenwalder, M.; Gerhard, M.; Janssen, K.-P.; Haller, D.: C/EBP homologous protein inhibits tissue repair in response to gut injury and is inversely regulated with chronic inflammation. Mucosal Immunology 7 (6), 2014, 1452-1466 more…
  • Wolf, M.; Adili, A.; Piotrowitz, K.; Abdullah, Z.; Boege, Y.; Stemmer, K.; Ringelhan, M.; Simonavicius, N.; Egger, M.; Wohlleber, D.; Lorentzen, A.; Einer, C.; Schulz, S.; Clavel, T.; Protzer, U.; Thiele, C.; Zischka, H.; Moch, H.; Tschöp, M.; Tumanov, A.; Haller, D.; Unger, K.; Karin, M.; Kopf, M.; Knolle, P.; Weber, A.; Heikenwalder, M.: Metabolic activation of intrahepatic CD8+ T cells and NKT cells causes nonalcoholic steatohepatitis and liver cancer via cross-talk with hepatocytes. Cancer Cell 26 (4), 2014, 549-564 more…
  • Wuensch, T.; Ullrich, S.; Schulz, S.; Chamaillard, M.; Schaltenberg, N.; Rath, E.; Goebel, U.; Sartor, R.B.; Prager, M.; Büning, C.; Bugert, P.; Witt, H.; Haller, D.; Daniel, H.: Colonic expression of the peptide transporter PEPT1 is downregulated during intestinal inflammation and is not required for NOD2-dependent immune activation. Inflammatory Bowel Diseases 20 (4), 2014, 671-684 more…

2013

  • Bosco, N.; Brahmbhatt, V.; Oliveira, M.; Martin, F.-P.; Lichti, P.; Raymond, F.; Mansourian, R.; Metairon, S.; Pace-Asciak, C.; Bastic Schmid, V.; Rezzi, S.; Haller, D.; Benyacoub, J.: Effects of increase in fish oil intake on intestinal eicosanoids and inflammation in a mouse model of colitis. Lipids in Health and Disease 12 (1), 2013 more…
  • Calder, P.C.; Ahluwalia, N.; Albers, R.; Bosco, N.; Bourdet-Sicard, R.; Haller, D.; Holgate, S.T.; Jönsson, L.S.; Latulippe, M.E.; Marcos, A.; Moreines, J.; Mrini, C.; Müller, M.; Pawelec, G.; Van Neerven, R.J.J.; Watzl, B.; Zhao, J.: A Consideration of Biomarkers to be Used for Evaluation of Inflammation in Human Nutritional Studies. British Journal of Nutrition 109 (SUPPL. S1), 2013, S1-S34 more…
  • Clavel, T.; Charrier, C.; Haller, D.: Streptococcus danieliae sp. nov., a novel bacterium isolated from the caecum of a mouse. Archives of Microbiology 195 (1), 2013, 43-49 more…
  • Clavel, T.; Charrier, C.; Wenning, M.; Haller, D.: Parvibacter caecicola gen. nov., sp. nov., a bacterium of the family Coriobacteriaceae isolated from the caecum of a mouse. International Journal of Systematic and Evolutionary Microbiology 63 (PART7), 2013, 2642-2648 more…
  • Clavel, T; Charrier, C; Wenning, M; Haller, D;: <em>Parvibacter ceacicola</em> gen.nov., spe.nov., a bacterium of the family <em>Coriobacteriaceae</em> isolated from the caecum of a mouse. International Journal of Systematic and Evolutionary Microbiology (63), 2013, 2642-2648 more…
  • Gruber, L.; Kisling, S.; Lichti, P.; Martin, F.-P.; May, S.; Klingenspor, M.; Lichtenegger, M.; Rychlik, M.; Haller, D.: High Fat Diet Accelerates Pathogenesis of Murine Crohn's Disease-Like Ileitis Independently of Obesity. PLoS ONE 8 (8), 2013 more…
  • Haller, Dirk: Editorial. Ernährung & Medizin 28 (03), 2013, 97-97 more…
  • Hörmannsperger, G.; von Schillde, M.-A.; Haller, D.: Lactocepin as a protective microbial structure in the context of IBD. Gut Microbes 4 (2), 2013, 152-157 more…
  • Hörmannsperger, Gabriele; Schaubeck, Monika; Haller, Dirk: Heilen mit Darmbakterien? Ernährung & Medizin 28 (03), 2013, 110-112 more…
  • Kläring, K.; Hanske, L.; Bui, N.; Charrier, C.; Blaut, M.; Haller, D.; Plugge, C.M.; Clavel, T.: Intestinimonas butyriciproducens gen. nov., sp. nov., a butyrate-producing bacterium from the mouse intestine. International Journal of Systematic and Evolutionary Microbiology 63 (PART 12), 2013, 4606-4612 more…
  • Lindenstrauß, A.G.; Behr, J.; Ehrmann, M.A.; Haller, D.; Vogel, R.F.: Identification of fitness determinants in Enterococcus faecalis by differential proteomics. Archives of Microbiology 195 (2), 2013, 121-130 more…
  • Rath, E.; Haller, D.: PKR-signaling in DSS-induced Colitis: Detrime-N-tal or prote-C-tive? Inflammatory Bowel Diseases 19 (3), 2013, E48-E49 more…
  • Reichardt, F.; Baudry, C.; Gruber, L.; Mazzuoli, G.; Moriez, R.; Scherling, C.; Kollmann, P.; Daniel, H.; Kisling, S.; Haller, D.; Neunlist, M.; Schemann, M.: Properties of myenteric neurones and mucosal functions in the distal colon of diet-induced obese mice. Journal of Physiology 591 (20), 2013, 5125-5139 more…
  • Schlapschy, M.; Binder, U.; Börger, C.; Theobald, I.; Wachinger, K.; Kisling, S.; Haller, D.; Skerra, A.: PASylation: A biological alternative to PEGylation for extending the plasma half-life of pharmaceutically active proteins. Protein Engineering, Design and Selection 26 (8), 2013, 489-501 more…
  • Steck, N.; Mueller, K.; Schemann, M.; Haller, D.: Bacterial proteases in IBD and IBS. Postgraduate Medical Journal 89 (1047), 2013, 25-33 more…
  • Wagner, S.J.; Schmidt, A.; Effenberger, M.J.P.; Gruber, L.; Danier, J.; Haller, D.: Semisynthetic diet ameliorates crohn's disease-like ileitis in TNF ΔARE/WT Mice through antigen-independent mechanisms of gluten. Inflammatory Bowel Diseases 19 (6), 2013, 1285-1294 more…
  • Wuensch, T.; Schulz, S.; Ullrich, S.; Lill, N.; Stelzl, T.; Rubio-Aliaga, I.; Loh, G.; Chamaillard, M.; Haller, D.; Daniel, H.: The peptide transporter PEPT1 is expressed in distal colon in rodents and humans and contributes to water absorption. American Journal of Physiology - Gastrointestinal and Liver Physiology 305 (1), 2013, G66-G73 more…

2012

  • Boeing, H.; Bechthold, A.; Bub, A.; Ellinger, S.; Haller, D.; Kroke, A.; Leschik-Bonnet, E.; Müller, M.J.; Oberritter, H.; Schulze, M.; Stehle, P.; Watzl, B.: Critical review: Vegetables and fruit in the prevention of chronic diseases. European Journal of Nutrition 51 (6), 2012, 637-663 more…
  • Chang, J.-S.; Ocvirk, S.; Berger, E.; Kisling, S.; Binder, U.; Skerra, A.; Lee, A.S.; Haller, D.: Endoplasmic reticulum stress response promotes cytotoxic phenotype of CD8αβ + intraepithelial lymphocytes in a mouse model for Crohn's disease-like ileitis. Journal of Immunology 189 (3), 2012, 1510-1520 more…
  • Gruber, L.; Lichti, P.; Rath, E.; Haller, D.: Nutrigenomics and nutrigenetics in inflammatory bowel diseases. Journal of Clinical Gastroenterology 46 (9), 2012, 735-747 more…
  • Haller, D.: Der Darm als Grenzfläche zur Umwelt. Aktuelle Ernährungsmedizin 37 (S 01), 2012, S26-S29 more…
  • Haller, D.: Author's response. Gut 61 (2), 2012, 324 more…
  • Hörmannsperger, G.; Clavel, T.; Haller, D.: Gut matters: Microbe-host interactions in allergic diseases. Journal of Allergy and Clinical Immunology 129 (6), 2012, 1452-1459 more…
  • Hörmannsperger, G.; Haller, D.: Prevention and treatment of diseases. Probiotics: Requirements and mechanisms of action [Prävention und Therapie von Erkrankungen: Probiotika: Anforderungen und Wirkmechanismen]. Pharmazie in Unserer Zeit 41 (2), 2012, 117-122 more…
  • Patterson, A.M.; Delday, M.I.; Van Kuppevelt, T.H.; Loh, G.; Blaut, M.; Haller, D.; Grant, G.; Kelly, D.: Expression of heparan sulfate proteoglycans in murine models of experimental colitis. Inflammatory Bowel Diseases 18 (6), 2012, 1112-1126 more…
  • Pfeiffer, N.; Desmarchelier, C.; Blaut, M.; Daniel, H.; Haller, D.; Clavel, T.: Acetatifactor muris gen. nov., sp. nov., a novel bacterium isolated from the intestine of an obese mouse. Archives of Microbiology 194 (11), 2012, 901-907 more…
  • Rath, E.; Berger, E.; Messlik, A.; Nunes, T.; Liu, B.; Kim, S.C.; Hoogenraad, N.; Sans, M.; Sartor, R.B.; Haller, D.: Induction of dsRNA-activated protein kinase links mitochondrial unfolded protein response to the pathogenesis of intestinal inflammation. Gut 61 (9), 2012, 1269-1278 more…
  • Rath, E.; Haller, D.: Mitochondria at the interface between danger signaling and metabolism: Role of unfolded protein responses in chronic inflammation. Inflammatory Bowel Diseases 18 (7), 2012, 1364-1377 more…
  • Rath, E.; Haller, D.: Unfolded protein responses in the intestinal epithelium: Sensors for the microbial and metabolic environment. Journal of Clinical Gastroenterology 46 (SUPPL. 1), 2012, S3-S5 more…
  • Steck, N.; Mueller, K.; Schemann, M.; Haller, D.: Bacterial proteases in IBD and IBS. Gut 61 (11), 2012, 1610-1618 more…
  • Von Schillde, M.-A.; Haller, D.: Multi-species probiotics and designer probiotics. Probiotics: Quo vadis...? [Multi-Spezies- und Designer-Probiotika: Probiotika: Quo Vadis...?]. Pharmazie in Unserer Zeit 41 (2), 2012, 149-153 more…
  • Von Schillde, M.-A.; Hörmannsperger, G.; Weiher, M.; Alpert, C.-A.; Hahne, H.; Bäuerl, C.; Van Huynegem, K.; Steidler, L.; Hrncir, T.; Pérez-Martínez, G.; Kuster, B.; Haller, D.: Lactocepin secreted by Lactobacillus exerts anti-inflammatory effects by selectively degrading proinflammatory chemokines. Cell Host and Microbe 11 (4), 2012, 387-396 more…

2011

  • Baur, P.; Martin, F.-P.; Gruber, L.; Bosco, N.; Brahmbhatt, V.; Collino, S.; Guy, P.; Montoliu, I.; Rozman, J.; Klingenspor, M.; Tavazzi, I.; Thorimbert, A.; Rezzi, S.; Kochhar, S.; Benyacoub, J.; Kollias, G.; Haller, D.: Metabolic phenotyping of the Crohn's disease-like IBD etiopathology in the TNF ΔARE/WT mouse model. Journal of Proteome Research 10 (12), 2011, 5523-5535 more…
  • Berger, E.; Haller, D.: Structure-function analysis of the tertiary bile acid TUDCA for the resolution of endoplasmic reticulum stress in intestinal epithelial cells. Biochemical and Biophysical Research Communications 409 (4), 2011, 610-615 more…
  • Hoffmann, M.; Messlik, A.; Kim, S.C.; Sartor, R.B.; Haller, D.: Impact of a probiotic Enterococcus faecalis in a gnotobiotic mouse model of experimental colitis. Molecular Nutrition and Food Research 55 (5), 2011, 703-713 more…
  • Krane, M.; Dummler, S.; Dreßen, M.; Hauner, H.; Hoffmann, M.; Haller, D.; Heller, K.; Wildhirt, S.; Voss, B.; Grammer, J.; Lahm, H.; Lange, R.; Bauernschmitt, R.: Identification of an up-regulated anti-apoptotic network in the internal thoracic artery. International Journal of Cardiology 149 (2), 2011, 221-226 more…
  • Krinninger, P.; Brunner, C.; Ruiz, P.A.; Schneider, E.; Marx, N.; Foryst-Ludwig, A.; Kintscher, U.; Haller, D.; Laumen, H.; Hauner, H.: Role of the adipocyte-specific NF-κB activity in the regulation of IP-10 and T cell migration. American Journal of Physiology - Endocrinology and Metabolism 300 (2), 2011, E304-E311 more…
  • Mapesa, J.O.; Waldschmitt, N.; Schmoeller, I.; Blume, C.; Hofmann, T.; Mahungu, S.; Clavel, T.; Haller, D.: Catechols in caffeic acid phenethyl ester are essential for inhibition of TNF-mediated IP-10 expression through NF-κB-dependent but HO-1- and p38-independent mechanisms in mouse intestinal epithelial cells. Molecular Nutrition and Food Research 55 (12), 2011, 1850-1861 more…
  • Rath, E.; Haller, D.: Inflammation and cellular stress: A mechanistic link between immune-mediated and metabolically driven pathologies. European Journal of Nutrition 50 (4), 2011, 219-233 more…
  • Rath, Eva; Berger, Emanuel; Messlik, Anja; Nunes, Tiago; Liu, Bo; Kim, Sandy C; Hoogenraad, Nick; Sans, Miquel; Sartor, R Balfour; Haller, Dirk: Induction of dsRNA-activated protein kinase links mitochondrial unfolded protein response to the pathogenesis of intestinal inflammation. Gut 61 (9), 2011, 1269-1278 more…
  • Renz, H.; Autenrieth, I.B.; Brandtzæg, P.; Cookson, W.O.; Holgate, S.; Von Mutius, E.; Valenta, R.; Haller, D.: Gene-environment interaction in chronic disease: A European Science Foundation Forward Look. Journal of Allergy and Clinical Immunology 128 (6 SUPPL.), 2011, S27-S49 more…
  • Renz, H.; Von Mutius, E.; Brandtzaeg, P.; Cookson, W.O.; Autenrieth, I.B.; Haller, D.: Gene-environment interactions in chronic inflammatory disease. Nature Immunology 12 (4), 2011, 273-277 more…
  • Steck, N.; Hoffmann, M.; Sava, I.G.; Kim, S.C.; Hahne, H.; Tonkonogy, S.L.; Mair, K.; Krueger, D.; Pruteanu, M.; Shanahan, F.; Vogelmann, R.; Schemann, M.; Kuster, B.; Sartor, R.B.; Haller, D.: Enterococcus faecalis metalloprotease compromises epithelial barrier and contributes to intestinal inflammation. Gastroenterology 141 (3), 2011, 959-971 more…
  • Werner, T.; Wagner, S.J.; Martínez, I.; Walter, J.; Chang, J.-S.; Clavel, T.; Kisling, S.; Schuemann, K.; Haller, D.: Depletion of luminal iron alters the gut microbiota and prevents Crohn's disease-like ileitis. Gut 60 (3), 2011, 325-333 more…
  • Wohlgemuth, S.; Keller, S.; Kertscher, R.; Stadion, M.; Haller, D.; Kisling, S.; Jahreis, G.; Blaut, M.; Loh, G.: Intestinal steroid profiles and microbiota composition in colitic mice. Gut Microbes 2 (3), 2011, 159-166 more…

2010

  • Clavel, T.; Duck, W.; Charrier, C.; Wenning, M.; Elson, C.; Haller, D.: Enterorhabdus caecimuris sp. nov., a member of the family Coriobacteriaceae isolated from a mouse model of spontaneous colitis, and emended description of the genus Enterorhabdus Clavel et al. 2009. International Journal of Systematic and Evolutionary Microbiology 60 (7), 2010, 1527-1531 more…
  • Clavel, T.; Saalfrank, A.; Charrier, C.; Haller, D.: Isolation of bacteria from mouse caecal samples and description of Bacteroides sartorii sp. nov. Archives of Microbiology 192 (6), 2010, 427-435 more…
  • Diegelmann, J.; Seiderer, J.; Niess, J.-H.; Haller, D.; Göke, B.; Reinecker, H.-C.; Brand, S.: Expression and regulation of the chemokine CXCL16 in Crohns disease and models of intestinal inflammation. Inflammatory Bowel Diseases 16 (11), 2010, 1871-1881 more…
  • Gerhard Rogler, G.; Haller, Dirk; Jobin, Christian: Microbiota in Chronic Mucosal Inflammation. International Journal of Inflammation 2010, 2010, 1-2 more…
  • Haller, D.: Nutrigenomics and IBD: The intestinal microbiota at the cross-road between inflammation and metabolism. Journal of Clinical Gastroenterology 44 (SUPPL. 1), 2010, S6-S9 more…
  • Haller, D.; Antoine, J.-M.; Bengmark, S.; Enck, P.; Rijkers, G.T.; Lenoir-Wijnkoop, I.: Guidance for substantiating the evidence for beneficial effects of probiotics: Probiotics in chronic inflammatory bowel disease and the functional disorder irritable bowel syndrome. Journal of Nutrition 140 (3), 2010, 690S-697S more…
  • Haller, D.; Antoine, J.-M.; Bengmark, S.; Enck, P.; Rijkers, G.T.; Lenoir-Wijnkoop, I.: Guidance for substantiating the evidence for beneficial effects of probiotics: Probiotics in chronic inflammatory bowel disease and the functional disorder irritable bowel syndrome (Journal of Nutrition (2010) 140, (690S-697S)). Journal of Nutrition 140 (6), 2010, 1189 more…
  • Haller, D.; Autenrieth, I.B.: Microbe-host interaction in chronic diseases. International Journal of Medical Microbiology 300 (1), 2010, 1-2 more…
  • Haller, D.; Ekici, P.; Friess, A.; Parlar, H.: High enrichment of MMP-9 and carboxypeptidase a by tweezing adsorptive bubble separation (TABS). Applied Biochemistry and Biotechnology 162 (6), 2010, 1547-1557 more…
  • Hörmannsperger, G.; Clavel, T.; Hoffmann, M.; Reiff, C.; Kelly, D.; Loh, G.; Blaut, M.; Hölzlwimmer, G.; Haller, D.: Posttranslational inhibition of proinflammatory chemokine secretion in intestinal epithelial cells: Implications for specific IBD indications. Journal of Clinical Gastroenterology 44 (SUPPL. 1), 2010, S10-S15 more…
  • Hörmannsperger, G.; Haller, D.: Molecular crosstalk of probiotic bacteria with the intestinal immune system: Clinical relevance in the context of inflammatory bowel disease. International Journal of Medical Microbiology 300 (1), 2010, 63-73 more…
  • Rijkers, G.T.; Bengmark, S.; Enck, P.; Haller, D.; Herz, U.; Kalliomaki, M.; Kudo, S.; Lenoir-Wijnkoop, I.; Mercenier, A.; Myllyluoma, E.; Rabot, S.; Rafter, J.; Szajewska, H.; Watzl, B.; Wells, J.; Wolvers, D.; Antoine, J.-M.: Guidance for substantiating the evidence for beneficial effects of probiotics: Current status and recommendations for future research. Journal of Nutrition 140 (3), 2010, 671S-676S more…
  • Sanders, M.E.; Akkermans, L.M.; Haller, D.; Hammerman, C.; Heimbach, J.; Hörmannsperger, G.; Huys, G.; Levy, D.D.; Lutgendorff, F.; Mack, D.; Phothirath, P.; Solano-Aguilar, G.; Vaughan, E.: Safety assessment of probiotics for human use. Gut microbes 1 (3), 2010, 164-185 more…
  • Sanders, M.E.; Akkermans, L.M.A.; Haller, D.; Hammerman, C.; Heimbach, J.; Hörmannsperger, G.; Huys, G.; Levy, D.D.; Lutgendorff, F.; Mack, D.; Phothirath, P.; Solano-Aguilar, G.; Vaughan, E.: Safety assessment of probiotics for human use. Gut Microbes 1 (3), 2010, 1-22 more…

2009

  • 4 Darmepithelzellen als interaktive Schnittstelle zwischen Bakterien und Immunsystem. In: Bischoff, Stephan C. (Ed.): Probiotika, Präbiotika und Synbiotika. Georg Thieme Verlag, 2009 more…
  • Clavel, T.; Charrier, C.; Braune, A.; Wenning, M.; Blaut, M.; Haller, D.: Isolation of bacteria from the ileal mucosa of TNFdeltaARE mice and description of Enterorhabdus mucosicola gen. nov., sp. nov. International Journal of Systematic and Evolutionary Microbiology 59 (7), 2009, 1805-1812 more…
  • Clavel, T.; Duck, W.; Charrier, C.; Wenning, M.; Elson, C.; Haller, D.: Enterorhabdus caecimuris sp. nov., a member of the family Coriobacteriaceae isolated from a mouse model of spontaneous colitis, and emended description of the genus Enterorhabdus Clavel et al. 2009. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 60 (7), 2009, 1527-1531 more…
  • Haller, Dirk; Hörmannsperger, Gabriele: Probiotische Mechanismen im Kontext chronisch entzündlicher Darmerkrankungen. Bauchredner 3, 2009 more…
  • Hoffmann, M.; Kim, S.C.; Sartor, R.B.; Haller, D.: Enterococcus faecalis strains differentially regulate Alix/AIP1 prote in express i on and ERK 1/2 activation in intestinal epithelial cells in the context of chronic experimental colitis. Journal of Proteome Research 8 (3), 2009, 1183-1192 more…
  • Hörmannsberger, Gabriele; Haller, Dirk: Probiotische Mechanismen im Kontext chronisch entzündlicher Darmerkrankungen. Deutsche Milchwirtschaft 16, 2009 more…
  • Hörmannsperger, G.; Clavel, T.; Hoffmann, M.; Reiff, C.; Kelly, D.; Loh, G.; Blaut, M.; Hölzlwimmer, G.; Laschinger, M.; Haller, D.: Post-translational inhibition of IP-10 secretion in IEC by probiotic bacteria: Impact on chronic inflammation. PLoS ONE 4 (2), 2009 more…
  • Martin, F.-P.J.; Rezzi, S.; Montoliu, I.; Philippe, D.; Tornier, L.; Messlik, A.; Hölzlwimmer, G.; Baur, P.; Quintanilla-Fend, L.; Loh, G.; Blaut, M.; Blum, S.; Kochhar, S.; Haller, D.: Metabolic assessment of gradual development of moderate experimental colitis in IL-10 deficient mice. Journal of Proteome Research 8 (5), 2009, 2376-2387 more…
  • Messlik, A.; Schmechel, S.; Kisling, S.; Bereswill, S.; Heimesaat, M.M.; Fischer, A.; Göbel, U.; Haller, D.: Loss of toll-like receptor 2 and 4 leads to differential induction of endoplasmic reticulum stress and proapoptotic responses in the intestinal epithelium under conditions of chronic inflammation. Journal of Proteome Research 8 (10), 2009, 4406-4417 more…
  • Reiff, C.; Delday, M.; Rucklidge, G.; Reid, M.; Duncan, G.; Wohlgemuth, S.; Hörmannsperger, G.; Loh, G.; Blaut, M.; Collie-Duguid, E.; Haller, D.; Kelly, D.: Balancing inflammatory, lipid, and xenobiotic signaling pathways by VSL#3, a biotherapeutic agent, in the treatment of inflammatory bowel disease. Inflammatory Bowel Diseases 15 (11), 2009, 1721-1736 more…
  • Werner, T.; Hoermannsperger, G.; Schuemann, K.; Hoelzlwimmer, G.; Tsuji, S.; Haller, D.: Intestinal epithelial cell proteome from wild-type and TNF ΔARE/WT mice: Effect of iron on the development of chronic ileitis. Journal of Proteome Research 8 (7), 2009, 3252-3264 more…
  • Wohlgemuth, S.; Haller, D.; Blaut, M.; Loh, G.: Reduced microbial diversity and high numbers of one single Escherichia coli strain in the intestine of colitic mice. Environmental Microbiology 11 (6), 2009, 1562-1571 more…

2008

  • Glas, J.; Konrad, A.; Schmechel, S.; Dambacher, J.; Seiderer, J.; Schroff, F.; Wetzke, M.; Roeske, D.; Török, H.-P.; Tonenchi, L.; Pfennig, S.; Haller, D.; Griga, T.; Klein, W.; Epplen, J.T.; Folwaczny, C.; Lohse, P.; Göke, B.; Ochsenkühn, T.; Mussack, T.; Folwaczny, M.; Müller-Myhsok, B.; Brand, S.: The ATG16L1 gene variants rs2241879 and rs2241880 (T300A) are strongly associated with susceptibility to Crohn's disease in the German population. American Journal of Gastroenterology 103 (3), 2008, 682-691 more…
  • Haller, D.: More than a fortress - The intestinal mucosa is an integral part of the gut acting as barrier and defence [Mehr als nur ein bollwerk - Das darmepithel als integraler bestandteil der barriere und abwehrfunktion im darm]. Aktuelle Ernahrungsmedizin 33 (SUPPL. 1), 2008, S7-S10 more…
  • Haller, Dirk: Molecular Interactions of Commensal Enteric Bacteria with the Intestinal Epithelium and the Mucosal Immune System. Bioscience and Microflora 27 (2), 2008, 37-48 more…
  • Hoffmann, M.; Rath, E.; Hölzlwimmer, G.; Quintanilla-Martinez, L.; Loach, D.; Tannock, G.; Haller, D.: Lactobacillus reuteri 100-23 transiently activates intestinal epithelial cells of mice that have a complex microbiota during early stages of colonization. Journal of Nutrition 138 (9), 2008, 1684-1691 more…
  • Matthies, A.; Clavel, T.; Gütschow, M.; Engst, W.; Haller, D.; Blaut, M.; Braune, A.: Conversion of daidzein and genistein by an anaerobic bacterium newly isolated from the mouse intestine. Applied and Environmental Microbiology 74 (15), 2008, 4847-4852 more…

2007

  • Clavel, T.; Haller, D.: Bacteria- and host-derived mechanisms to control intestinal epithelial cell homeostasis: Implications for chronic inflammation. Inflammatory Bowel Diseases 13 (9), 2007, 1153-1164 more…
  • Clavell, T.; Haller, D.: Molecular interactions between bacteria, the epithelium, and the mucosal immune system in the intestinal tract: Implications for chronic inflammation. Current Issues in Intestinal Microbiology 8 (2), 2007, 25-43 more…
  • Dambacher, J.; Beigel, F.; Seiderer, J.; Haller, D.; Göke, B.; Auernhammer, C.J.; Brand, S.: Interleukin 31 mediates MAP kinase and STAT1/3 activation in intestinal epithelial cells and its expression is upregulated in inflammatory bowel disease. Gut 56 (9), 2007, 1257-1265 more…
  • Ruiz, P.A.; Braune, A.; Hölzlwimmer, G.; Quintanilla-Fend, L.; Haller, D.: Quercetin inhibits TNF-induced NF-κB transcription factor recruitment to proinflammatory gene promoters in murine intestinal epithelial cells. Journal of Nutrition 137 (5), 2007, 1208-1215 more…
  • Seiderer, J.; Dambacher, J.; Kühnlein, B.; Pfennig, S.; Konrad, A.; Török, H.-P.; Haller, D.; Göke, B.; Ochsenkühn, T.; Lohse, P.; Brand, S.: The role of the selenoprotein S (SELS) gene -105G&gt;A promoter polymorphism in inflammatory bowel disease and regulation of SELS gene expression in intestinal inflammation. Tissue Antigens 70 (3), 2007, 238-246 more…
  • Shkoda, A.; Ruiz, P.A.; Daniel, H.; Kim, S.C.; Rogler, G.; Sartor, R.B.; Haller, D.: Interleukin-10 Blocked Endoplasmic Reticulum Stress in Intestinal Epithelial Cells: Impact on Chronic Inflammation. Gastroenterology 132 (1), 2007, 190-207 more…
  • Shkoda, A.; Werner, T.; Daniel, H.; Gunckel, M.; Rogler, G.; Haller, D.: Differential protein expression profile in the intestinal epithelium from patients with inflammatory bowel disease. Journal of Proteome Research 6 (3), 2007, 1114-1125 more…
  • Werner, T.; Haller, D.: Intestinal epithelial cell signalling and chronic inflammation: From the proteome to specific molecular mechanisms. Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis 622 (1-2), 2007, 42-57 more…
  • Werner, T.; Shkoda, A.; Haller, D.: Intestinal epithelial cell proteome in IL-10 deficient mice and IL-10 receptor reconstituted epithelial cells: Impact on chronic inflammation. Journal of Proteome Research 6 (9), 2007, 3691-3704 more…

2006

  • Haller, D.: Intestinal epithelial cell signalling and host-derived negative regulators under chronic inflammation: To be or not to be activated determines the balance towards commensal bacteria. Neurogastroenterology and Motility 18 (3), 2006, 184-199 more…
  • Ruiz, P.A.; Haller, D.: Functional diversity of flavonoids in the inhibition of the proinflammatory NF-κB, IRF, and Akt signaling pathways in murine intestinal epithelial cells. Journal of Nutrition 136 (3), 2006, 664-671 more…
  • Ruiz, P.A.; Shkoda, A.; Kim, S.C.; Sartor, R.B.; Haller, D.: IL-10 gene-deficient mice lack TGF-beta/Smad-mediated TLR2 degradation and fail to inhibit proinflammatory gene expression in intestinal epithelial cells under conditions of chronic inflammation. Annals of the New York Academy of Sciences 1072, 2006, 389-394 more…

2005

  • Haller, Dirk: Molecular Interactions of Commensal Enteric Bacteria with the Intestinal Epithelium and the Mucosal Immune System: Implications for Chronic Intestinal Inflammation. In: Probiotics and Prebiotics: Scientific Aspects. Caister Academic Press, 2005 more…
  • Ruiz, P.A.; Hoffmann, M.; Szcesny, S.; Blaut, M.; Haller, D.: Innate mechanisms for Bifidobacterium lactis to activate transient pro-inflammatory host responses in intestinal epithelial cells after the colonization of germ-free rats. Immunology 115 (4), 2005, 441-450 more…
  • Ruiz, P.A.; Shkoda, A.; Kim, S.C.; Sartor, R.B.; Haller, D.: IL-10 gene-deficient mice lack TGF-β/Smad signaling and fail to inhibit proinflammatory gene expression in intestinal epithelial cells after the colonization with colitogenic Enterococcus faecalis. Journal of Immunology 174 (5), 2005, 2990-2999 more…

2004

  • Cender, J.C.; Haller, D.; Holt, L.; Sartor, B.: Regulation of proinflammatory cytokines by commensal and probiotic bacteria. EOS Rivista di Immunologia ed Immunofarmacologia 24 (1-2), 2004, 64-68 more…
  • Haller, D.: Interaction between non-pathogenic enteric bacteria with the intestinal epithelium: Can a healthy relationship turn sour? EOS Rivista di Immunologia ed Immunofarmacologia 24 (1-2), 2004, 35-38 more…
  • Haller, D.; Holt, L.; Parlesak, A.; Zanga, J.; Bäuerlein, A.; Sartor, R.B.; Jobin, C.: Differential effect of immune cells on non-pathogenic Gram-negative bacteria-induced nuclear factor-κB activation and pro-inflammatory gene expression in intestinal epithelial cells. Immunology 112 (2), 2004, 310-320 more…
  • Haller, D.; Jobin, C.: Interaction between resident luminal bacteria and the host: can a healthy relationship turn sour? Journal of Pediatric Gastroenterology and Nutrition 38 (2), 2004, 123-136 more…
  • Parlesak, A.; Haller, D.; Brinz, S.; Baeuerlein, A.; Bode, C.: Modulation of cytokine release by differentiated CACO-2 cells in a compartmentalized coculture model with mononuclear leucocytes and nonpathogenic bacteria. Scandinavian Journal of Immunology 60 (5), 2004, 477-485 more…
  • Ruiz, P.A.; Kim, S.C.; Sartor, R.B.; Haller, D.: 15-Deoxy-Δ12,14-prostaglandin J<inf>2</inf>-mediated ERK signaling inhibits gram-negative bacteria-induced RelA phosphorylation and interleukin-6 gene expression in intestinal epithelial cells through modulation of protein phosphatase 2A activity. Journal of Biological Chemistry 279 (34), 2004, 36103-36111 more…

2003

  • Haller, D.; Holt, L.; Kim, S.C.; Schwabe, R.F.; Sartor, R.B.; Jobin, C.: Transforming growth factor-β1 inhibits non-pathogenic Gram-negative bacteria-induced NF-κB recruitment to the interleukin-6 gene promoter in intestinal epithelial cells through modulation of histone acetylation. Journal of Biological Chemistry 278 (26), 2003, 23851-23860 more…

2002

  • Blum, S.; Haller, D.; Pfeifer, A.; Schiffrin, E.J.: Probiotics and immune response. Clinical Reviews in Allergy and Immunology 22 (3), 2002, 287-309 more…
  • Haller, D.; Russo, M.P.; Balfour Sartor, R.; Jobin, C.: IKKβ and phosphatidylinositol 3-kinase/Akt participate in non-pathogenic gram-negative enteric bacteria-induced RelA phosphorylation and NF-κB activation in both primary and intestinal epithelial cell lines. Journal of Biological Chemistry 277 (41), 2002, 38168-38178 more…
  • Haller, D.; Serrant, P.; Granato, D.; Schiffrin, E.J.; Blum, S.: Activation of human NK cells by staphylococci and lactobacilli requires cell contact-dependent costimulation by autologous monocytes. Clinical and Diagnostic Laboratory Immunology 9 (3), 2002, 649-657 more…
  • Haller, D.; Serrant, P.; Peruisseau, G.: IL-10 producing CD14low monocytes inhibit lymphocyte-dependent activation of intestinal epithelial cells by commensal bacteria. Microbiology and Immunology 46 (3), 2002, 195-205 more…
  • Haller, D; Sartor R. Balfour: Induction of Tolerogenic versus Pathogenic Mucosal Immune Responses by Commensal Enteric Bacteria. In: Oral Tolerance: The Response of the Intestinal Mucosa to Dietary Antigens. Landes Bioscience/Eurekah.com, 2002 more…
  • Hammes, Walter P.; Haller, D.; Gänzle Michael G.: Fermented Meat. In: Handbook of Fermented Functional Foods. CRC Press (Second Edition. edn.), 2002 more…

2001

  • Haller, D.; Colbus, H.; Gänzle, M.G.; Scherenbacher, P.; Bode, C.; Hammes, W.P.: Metabolic and functional properties of lactic acid bacteria in the gastro-intestinal ecosystem: A comparative in vitro study between bacteria of intestinal and fermented food origin. Systematic and Applied Microbiology 24 (2), 2001, 218-226 more…

2000

  • Haller, D.; Blum, S.; Bode, C.; Hammes, W.P.; Schiffrin, E.J.: Activation of human peripheral blood mononuclear cells by nonpathogenic bacteria in vitro: Evidence of NK cells as primary targets. Infection and Immunity 68 (2), 2000, 752-759 more…
  • Haller, D.; Bode, C.; Hammes, W.P.; Pfeifer, A.M.A.; Schiffrin, E.J.; Blum, S.: Non-pathogenic bacteria elicit a differential cytokine response by intestinal epithelial cell/leucocyte co-cultures. Gut 47 (1), 2000, 79-87 more…

1999

  • Blum, S.; Alvarez, S.; Haller, D.; Perez, P.; Schiffrin, E.J.: Intestinal microflora and the interaction with immunocompetent cells. Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology 76 (1-4), 1999, 199-205 more…
  • Blum, S.; Delneste, Y.; Alvarez, S.; Haller, D.; Perez, P.F.; Bode, Ch.; Hammes, W.P.; Pfeifer, A.M.A.; Schiffrin, E.J.: Interactions between commensal bacteria and mucosal immunocompetent cells. International Dairy Journal 9 (1), 1999, 63-68 more…
  • Haller, D.; Bode, C.; Hammes, W.P.: Cytokine secretion by stimulated monocytes depends on the growth phase and heat treatment of bacteria: A comparative study between lactic acid bacteria and invasive pathogens. Microbiology and Immunology 43 (10), 1999, 925-935 more…

1997

  • Haller, D.; Scherenbacher, P.; Bode, Ch.; Hammes, W.P.: Selektion potentiell probiotischer Bakterien. Zeitschrift fur Ernahrungswissenschaft 36 (1), 1997, 87 more…